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How to Germinate Cannabis Seeds in Hydro

We have a cannabis seedling germination page which has everything you need to know about all the different germination methods, but this tutorial is different. In this hydroponic seedling tutorial I’m going to share exactly how I do my seeds from beginning to end in a DWC/bubbleponics setup!

Just follow these instructions and you’ll end up with healthy, fast-growing plants that germinate in just a few days. It’s pretty much fail proof!

Learn How to Start Seedlings So You Can Grow Hydroponic Cannabis Plants Like This!

Supplies Needed

1.) Get Cannabis Seeds

There are a few different ways to get cannabis seeds, with the most common being ordering seeds online and growing seeds you find in weed that you buy. Learn how to research and find the right strain.

Here’s a picture showing several healthy and viable cannabis seeds

2.) Germination for Hydroponics

I’ve tried a bunch of different germination methods over the years, and the technique I prefer is for hydroponics is starting with the “Paper towel method” to germinate, putting the germinated seeds into Rapid Rooters, and installing the Rapid Rooters directly into reservoir. Lots of other germination methods as well, but this has worked best for me!

Paper Towel Method

This method is hard to mess up if you follow the instructions!

  1. Place your seeds inside a folded wet paper towel, and place it between two paper plates (or regular plates) so that they don’t dry out.
  2. Check on your seeds every 12 hours but try not to disturb them. When they’ve germinated, you’ll see the seeds have cracked and there are little white roots coming out.
  3. They should germinate in 1-4 days, though some seeds can take a week or longer (especially older seeds).
  4. Keep them warm if possible. One thing you can do to get seeds to germinate a little faster is to keep them in a warm place (75-80°F). Some people use a seedling heat mat but in most cases that’s unnecessary.

These seedlings were sprouted using the paper towel method!

3.) Place Germinated Seed in a Rapid Rooter

The Rapid Rooter should be cut open lengthwise

Gently place the germinated seed inside, root down

Most seedling plugs will go back into place easily, and you’ll barely be able to tell it’s been opened 🙂

4.) Prepare Hydro System for Its New Guest

If you haven’t put your hydroponic system together yet, now is the time! Make sure your pumps are all running, and that you’ve made a reservoir with seedling-strength nutrients. You need a home to put your new plants!

Hydro Tips & Hints

  • Air bubbles – have lots and lots of bubbles in your water reservoir. That means your air pump needs to be on all the time for the full grow. The main benefit of hydro is your plant roots are getting an unlimited amount of both water and oxygen. This is achieved by dissolving a lot of air into the water via an air stone and air pump. In order to get the fast growth, you want a lot of bubbles! A highly-oxygenated tank is also far less likely to get root rot, or suffer from other unwanted organisms growing in the reservoir!
  • Hydroguard – This supplement contains a specific bacteria that was first found in rice paddies in Japan in the 40s! It’s been common in Asia for years but only in the last several years has it been available in the US from a company called Botanicare. I highly recommend, even insist, that all hydro growers get this cheap-but-effective supplement to keep plant roots healthy!
  • Add seedling level nutrients from the beginning. A lot of growers, especially soil growers, will tell you not to add any nutrients for the first few weeks of the plant’s life. That makes a lot of sense in soil, because there are lots of nutrients contained in the soil itself for your young cannabis seedling, and giving more right at the beginning can end up giving way too much for such a young plant. However, in hydro, the only nutrients your seedling gets is what’s in the water, plus what little was contained in the seed itself. Because of that, I highly recommend giving seedling-strength nutrients to your plants from when you first fill your reservoir. Seedlings grow a LOT faster with light levels of nutrients than if you only give plain, pH’ed water at first.
  • Always check the pHfrom the beginning of your plant’s life to end the of your plant’s life

5.) Install Rapid Rooter and water the seedlings until roots reach the water reservoir – Turn on light to keep seedlings warm for best results!

Make sure to always keep the Rapid Rooter moist but not soaking wet.

If you have a top-feed, place the tube near the bottom of the net pot so the water isn’t soaking the seedling’s roots. You just want water dripping out the bottom so the root can use it for oxygen and water until it’s fully established in the reservoir.

Add your Rapid Rooter(s), and fill around the edges with extra clay pellets to hold each one in place.

Since your seed has already sprouted and been in placed into the right growing position, it’ll often pop its head out within just 12-24 hours! Sometimes you see just the leaves, but occasionally you actually see the seedling push the shell above ground. I keep the grow light on even before the seedling appears. It helps keep it warm and guide it toward the light.

When this happens the shell usually falls off on its own as the seedling grows!

The Rapid Rooter in this picture is a little too wet, which makes the seedling prone to “damping off.” If you ever notice the Rapid Rooter actually looks wet or shiny, it’s too much water. Try turning the top-feed off every few hours, or hand-watering the seedling at first. Too much moisture can kill!

Don’t use a humidity dome on seedlings unless it’s very dry where you live. If you do use a dome, consider keeping a vent open and watching the humidity. A young seedling doesn’t require high humidity, and they tend to get “wet feet” and stop growing in constantly wet conditions.

Now that your seedling in in the tank, it’s time to learn how to….

6.) Take Care of Hydro Seedlings

Here are tips for taking the best care of hydroponic marijuana seedlings:

  • Leave roots alone as much as you can with young seedlings in a hydroponic setup. It takes them a little while to get all established in the tank, almost like a fish, and during that time seedlings are much more sensitive to their roots being touched or being moved around. If at all possible, try to let the seedling grow in the same place without being moved for at least a few weeks until you put them in their final home, or even just start them in their final home!
  • Avoid reservoir changes for a few weeks if you can – Going along with what I said before about leaving the roots alone, I’ve found that young seedlings often don’t respond well to reservoir changes. Instead of changing the reservoir, just top off with half-strength vegetative nutrient water until the plant is at least 3 weeks old. It won’t be using enough nutrients to mess with the ratios, and as long as you maintain the pH and use Hydroguard your young plant will be fine with being topped off.
  • Check the pH dailyto prevent nutrient deficiencies
  • Warm but not hot temperature– I recommend hydro growers aim for 75°F, and try to stay between 73-80°F.

These seedlings are a few weeks old, and the grower plans to move them all to the

This is a time-lapse video of a cannabis seedling sprouting and growing over 13 days.

Cannabis seedlings just getting their bearings – try to avoid moving or disturbing them until they are growing fast, with new leaves every day!

Big cannabis plants ready to switch to the flowering stage

I thought hydro plants liked it cold?

Just like in soil, cannabis plants in hydro tend to grow faster in relatively warm temperatures. This is a somewhat controversial statement because a lot of hydro growers prefer to keep their temperature lower in the grow space to help prevent root rot. In fact, there are some growers right now who are reading this and shaking their heads at me.

There’s good reason to believe that hydro plants would grow better with a cool reservoir. For example, the bad microorganisms that make root rot don’t survive well at lower temperatures. Additionally, water can physically hold more oxygen at lower temperatures, which seems like it would be great for faster plant growth. Because of this, lots of growers will AC their room to 60°F, and/or get a water chiller to cool their water reservoir to a similar temperature.

I do agree that if the temperature is above 80°F, your plant is a lot more likely to get root rot. However, I personally have not found that cool temperatures are adequate to prevent root rot. Even if the temperature is 60°F, you still need lots of bubbles and a “good bacteria” supplement like Hydroguard to prevent root rot in many cases.

I’ve seen several growers buy a water chiller and still get root rot. So I personally don’t believe cold temperatures are the best way to go to keep roots healthy.

The other reason I recommend to keep it warmer is because the plants just grow faster around 75°F in hydro. If your roots go from 60°F to 75°F, you’ll see the plants start growing faster in just a day or two, just like how plants in soil grow faster when it’s warm!

Just like in soil or coco, cannabis plants in hydro grow fastest when it’s a little warm, around 75°F!

Although there may be more oxygen dissolved in the water at lower temperatures, at least in my grow tent that apparently isn’t the limiting factor to growth, because plant growth speeds up at warmer temperatures.

I’ve found that if the grow space feels cool to you, it also feels cool to your plant most likely, and it may not be growing to its full potential. Some Sativa strains are particularly sensitive to the cold, though some Indica strains from cold climates will still thrive at lower temps.
Autopsy: Why Aren’t My Seeds Sprouting?

If your seeds still aren’t sprouting and growing properly, consider the following factors.

If there’s no germination at all…

  • Temperature may be too hot or cold – aim for 75-80°F
  • Too wet – seeds and seedling roots should always be moist, but should not stay wet
  • Too dry – if a root dries out the seedling can die!
  • Bad seeds – It might not be you, it could be the seeds themselves! How can I tell if seeds are viable?

If seeds sprout, but then stop growing…

  • Temperature is too hot or cold – aim for 73-78°F
  • Too wet – even though your plants are growing with root directly in water, new seedlings don’t like “wet feet”. They don’t like for it to be too wet near the seed for too long, so make sure your Rapid Rooter or growing medium nevers looks shiny or muddy, as that means there’s too much water! Young roots that stay too wet for too long start to get mushy and die. For this reason, it’s also usually recommended to avoid using a humidity dome with seedlings unless your air is dry. Although clones love humidity domes (they need water from the air because they don’t have any roots to get water), seedlings like it a little more dry or roots tend to get mushy.
  • Too dry – less common unless you live in a very dry area, but sometimes your medium dries out too fast if you’ve got a heavy-drinking, fast-growing seedling!
  • Too much light – if the seedlings get blasted with high levels of light right away, it can shock them. They may need some time to adjust to higher light levels. Simply starting your grow light a little further away that normal is usually enough.Think sunny window at first, and start ramping up after a week of healthy growth.
  • Not enough light – if seedlings are growing long and stretchy without growing new sets of leaves, it means it wants more light.
  • No light for more than a day – if the sprouted seed doesn’t get light within 24 hours after sprouting, it may die. Once seeds are sprouted, get them in a Rapid Rooter and under at least some amount of light as soon as possible!
  • Roots damaged – If somehow your roots got damaged, it can sometimes stop the seedling from growing

Unfortunately sometimes you will never know why certain seeds just don’t thrive! It’s all part of nature 🙂

How to Germinate Cannabis Seeds in Hydro We have a cannabis seedling germination page which has everything you need to know about all the different germination methods, but this tutorial is

A Simple Guide to Starting Seeds for Hydroponics

So you’re ready to get started in hydroponics and you’re about to start some seeds…

But you have no idea where to get started?​

You’re not alone — when I first started gardening, I was a soil gardener.

Starting seeds for hydroponics systems was unknown to me until I started to build deep water culture and ebb and flow systems. Once I built those, I had to learn how to start seeds hydroponically.

One of the main benefits of hydroponics is the absolute control you have over your growing environment. Knowing that, I didn’t want to germinate seeds in soil and then transplant into a my hydroponic system, adding a bunch of dirt to the system.

There had to be another way.

Here are just a few reasons why you want to start seeds in a hydroponic system as opposed to soil:

  • Much cleaner than starting seeds in soil
  • Seedlings grow faster after germination
  • Easy to transplant into a larger hydroponic system

That second reason is a cool one. As soon as your tap root pops out, a hydroponic system is going to help it grow faster than soil and prevent it from becoming rootbound.

Step 1: Get Your Materials

You don’t need much to get started. If you build your cloner yourself, the rest of the materials will cost you under $50 bucks and will last you for quite a while. If you decide to go with a store-bought cloner, it’ll bump up the cost a bit but you’ll also be getting a much higher quality product.

Seed Starting Materials List

  1. Hydroponic Cloner – You can either build your own or use something like the Clone King and starter plugs (#3 below)
  2. 2″ Net Pots
  3. Rapid Rooter Starter Plugs
  4. Seeds – find at your local nursery if possible, or buy many places online. A personal favorite of mine is RareSeeds.com
  5. Air Pump
  6. Air Stone
  7. Tubing

Step 2: Fill The Cloner With Water

Fairly simple step here. All you need to do is fill up your reservoir to just under where your net pots sit. Don’t worry about pHing your water or using reverse osmosis right now – standard tap water will be fine.

Step 3: Set Up the Air Pump

Place the air stone in the reservoir and connect the tubing. Connect the other side to the air pump and plug it in. You should see some beautiful bubbles start to come out of the air stone. These bubbles are what will keep the roots of your seeds moist and stimulate growth.

Step 4: Place Starter Plugs and Seeds

Soak each starter plug in some water and then place it in a net pot. The moisture will help the seeds germinate.

Drop 2-3 seeds in each starter plug. We use more than 1 seed because not all seeds will germinate and we want to make sure that every starter plug has a sprouted seed – otherwise we’ll have to replant!

Step 5: Maintenance

This system is very easy to maintain as your seeds sprout.

If you want, you can place a transparent cover over the top to keep in some moisture and increase the temperature of the system, but it’s not necessary.

Make sure to moisten the starter plugs with a few sprays from a spray bottle every day so your seeds have enough moisture to sprout.

When your seeds sprout, clip off all but the strongest seedling from each starter plug.

That’s it! Your seeds should sprout in 3-5 days for most plants and you’ll be ready to start growing some truly epic plants in your hydroponic system in no time!

Video Guide

If you’re more of a visual learner, I have a three part video series from my YouTube channel​ that goes into the entire setup in detail.

Part One: The Basic Setup

This is the visual version of the blog post. Helpful if you just need to SEE to learn (like me).​

Part Two: Making Sure Seeds Germinate

This part of the series talks about some of the maintenance and troubleshooting you might run into when starting seeds, including the infamous “why do they keep falling over” problem that a lot of beginners run into.​

Part Three: pH Water and Add Nutrients

This part of the series talks about the need to pH and add nutrients to your reservoir after the seeds have germinated. Because they feed off of their seed leaves at the start of their life, you can get away with not doing this until the seeds germinate.

By the way, I’m using the Bluelab pH Pen​ to fill all of my pH needs. It’s awesome!

Starting seeds for hydroponics doesn't have to be difficult. In fact, it's really easy! Learn how to do it in 10 minutes with this Epic Gardening tutorial!